PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof001920
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family AP2
Protein Properties Length: 349aa    MW: 38153.1 Da    PI: 5.1374
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-475133732PU_refplantGDBView CDS
gnl|UG|Sof#S17388358PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.71.9e-15178237155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s ++GV++++++g+++A+++d  +   g  ++ k+++lg+++t+e+Aa+a++ a+ k++g
  Sof001920 178 SSFHGVTRHRWSGKYEAHLWDsSCRvEGrrRKgKQVYLGSYDTEEKAARAYDVAAIKYWG 237
                5799*****************877786666336*************************98 PP

2AP236.99e-12280331155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV+++ k+grW A+I  +        + ++lg+    eeAa+a++ a+ +++g
  Sof001920 280 SIYRGVTRKQKDGRWQARIGLV-----AgtRDIYLGTXQNGEEAAEAYDXAAIEIRG 331
                57****************9995.....234************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.97E-18178247IPR016177DNA-binding domain
CDDcd000189.92E-21178246No hitNo description
PROSITE profilePS5103219.401179245IPR001471AP2/ERF domain
SMARTSM003809.5E-29179251IPR001471AP2/ERF domain
PfamPF008473.7E-12179237IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-17179246IPR001471AP2/ERF domain
PfamPF008471.5E-6280331IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-12280340IPR016177DNA-binding domain
SMARTSM003804.2E-15281345IPR001471AP2/ERF domain
PROSITE profilePS5103215.264281339IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-14281340IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MEESDVGVNP GKQMEEDKAA GESGDEGKIE RSHSINLNRV PAIAVEARST QGNGETHGTA  60
VSGTKDAGTG KAEQSSGDGQ EKLPKCEQVD YESEIEGCAD DENPVKKAAL VTLVGNEYCG  120
GDDDERVQVL TIVKKDEPAD DIGDCINPGT VASYSEVKGA VGASATSSAV RPAGSRSSSF  180
HGVTRHRWSG KYEAHLWDSS CRVEGRRRKG KQVYLGSYDT EEKAARAYDV AAIKYWGQNT  240
RLNFPIEQYG KELEDIRDLS REECVTYLRR RSSCFSRGAS IYRGVTRKQK DGRWQARIGL  300
VAGTRDIYLG TXQNGEEAAE AYDXAAIEIR GKNACDKFDR SHYVEQGMX
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204211GRRRKGKQ
2268289RRRSSCFSRGASIYRGVTRKQK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.116770.0inflorescence| meristem| root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008681093.10.0PREDICTED: uncharacterized protein LOC100193057 isoform X1
SwissprotQ1PFE16e-78AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ6PQQ31e-77AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLB6SXJ50.0B6SXJ5_MAIZE; Protein BABY BOOM 2
STRINGSb04g027940.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.12e-68AINTEGUMENTA-like 5